PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G10100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 245aa    MW: 25795 Da    PI: 5.0629
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G10100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC169.63.7e-53451501101
            NF-YC   1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                      ql++fw++q     + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rtd+f
  OMERI03G10100.1  45 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDVF 138
                      89*****997665555689*************************************************************************** PP

            NF-YC  90 dflvdivprdel 101
                      dflvdivpr+e 
  OMERI03G10100.1 139 DFLVDIVPREEA 150
                      *********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.32E-3133141IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.7E-3761132IPR009072Histone-fold
PfamPF008082.8E-2069132IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MENQQLPYAG QPAAAGAGAP VPGVPGGGGP PAVPHHHLLQ QQQAQLQAFW AYQRQEAERA  60
SASDFKNHQL PLARIKKIMK ADEDVRMISA EAPVLFAKAC ELFILELTIR SWLHAEENKR  120
RTLQRNDVAA AIARTDVFDF LVDIVPREEA KEEPGSALGF AAGGPGAVGA AGPAAGLPYY  180
YPPMGQPAPM MPAWHVPAWD PAWQQGAAPD VDQGAAGSFS EEGQQGFAGH GGAAAGFPPA  240
PPSSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-434614719119HapE
4g92_C1e-434614719119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125RRTLQRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8365390.0CT836539.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN017G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147992.11e-116nuclear transcription factor Y subunit C-1
RefseqXP_008675138.11e-116PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1
SwissprotQ9FMV51e-75NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0E0CY551e-175A0A0E0CY55_9ORYZ; Uncharacterized protein
STRINGGRMZM2G089812_P011e-116(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73453551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-63nuclear factor Y, subunit C4